Difference between revisions of "ICFO"
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(Created page with "== Fiji == For starting Fiji, you need to start to log into Jupyterlab, start the virtual desktop and start: /data/icfo/software/Fiji.app") |
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| − | == | + | == Image viewers == |
| − | + | There is some limited support for running graphical applications at | |
| − | + | PIC. First you need to log into JupyterLab (jupyter.pic.es) and click | |
| + | on the virtual desktop icon (orange D). This will open a graphical | ||
| + | desktop with a single terminal, from where you can launch the image | ||
| + | viewers. | ||
| − | /data/icfo/software/Fiji.app | + | [[File:Screenshot_2025-02-05_at_10.48.54.png|700px|Desktop]] |
| + | |||
| + | === Fiji === | ||
| + | |||
| + | Log into the desktop (see above) and run the following command: | ||
| + | |||
| + | |||
| + | <code> | ||
| + | /data/icfo/software/Fiji.app/ImageJ-linux64 | ||
| + | </code> | ||
| + | |||
| + | === Napari === | ||
| + | |||
| + | Log into the desktop (see above) and run the following command: | ||
| + | |||
| + | <code> | ||
| + | /data/icfo/software/bin/run_napari | ||
| + | </code> | ||
Latest revision as of 11:24, 5 February 2025
Image viewers
There is some limited support for running graphical applications at PIC. First you need to log into JupyterLab (jupyter.pic.es) and click on the virtual desktop icon (orange D). This will open a graphical desktop with a single terminal, from where you can launch the image viewers.
Fiji
Log into the desktop (see above) and run the following command:
/data/icfo/software/Fiji.app/ImageJ-linux64
Napari
Log into the desktop (see above) and run the following command:
/data/icfo/software/bin/run_napari