Spark on farm

In order to launch a Spark cluster, follow these steps:

1) Deploy a Spark installation on your ~

2) On a UI, start a spark master using this command and write down the master url provided

   ${SPARK_HOME}/sbin/start-master.sh -h $(hostname)

3) Create a submit script like this one, substituting <VARIABLES>

   SPARK_MASTER=<MASTER_URL>
   NUM_CORES=1
   MEMORY=4g
   
   cd ${TMPDIR}
   
   echo "spark.executor.extraJavaOptions -Djava.io.tmpdir=${TMPDIR}" > spark-defaults.conf
   echo "spark.local.dir ${TMPDIR}" >> spark-defaults.conf
   echo "spark.pyspark.python /nfs/pic.es/user/t/tallada/env/correlation/bin/python" >> spark-defaults.conf

   <SPARK_HOME>/bin/spark-class \
   org.apache.spark.deploy.worker.Worker ${SPARK_MASTER} \
   -c ${NUM_CORES} -m ${MEMORY} -d ${TMPDIR} --properties-file spark-defaults.conf

4) Submit the previous script to the farm

   qsub -q <QUEUE> -t 1-<NUM_WORKERS> <SUBMIT_SCRIPT>

5) After a few minutes, workers should start registering to the master.

6) Create your SparkContext connecting it to the <MASTER_URL>

   spark = SparkSession.builder.master(<MASTER_URL>).getOrCreate()
   sc = spark.sparkContext

7) Enjoy!